quantms: A cloud-based workflow for peptide and protein quantification.¶
Welcome to the quantms workflow, a cloud-based workflow for quantitative proteomics analysis of large mass-spectrometric data sets. Several labeling techniques as well as label-free quantification are supported.
Contents¶
- Installation and usage
- Quantitative mass spectrometry data analysis
- Formats in quantms
- Conversion and preprocessing
- Peptide identification from fragment spectra
- Data-dependent acquisition (DDA) quantification
- Data-independent acquisition (DIA) quantification
- Statistical post-processing of raw quantification results
- pMultiQC
- Benchmarks
- How to debug the pipeline
- Frequently asked questions
- Presentations and Tutorials
- Information on development and how to get involved
- How and when to contact us where
The following links should be followed to get support and help with the quantms maintainers:
